Ph.D. Thesis Title: Towards causality in gene regulatory network inference.

MIT Graduate Publications:

Bayesian information sharing enhances detection of regulatory associations in rare cell types.

Wu AP, Peng J, Berger B, Cho H.Bioinformatics. 2021 Jul 12;37(Suppl_1):i349-i357. doi: 10.1093/bioinformatics/btab269.PMID: 34252956 Free PMC article

Structural and functional properties of mSWI/SNF chromatin remodeling complexes revealed through single-cell perturbation screens.

Otto JE, Ursu O, Wu AP, Winter EB, Cuoco MS, Ma S, Qian K, Michel BC, Buenrostro JD, Berger B, Regev A, Kadoch C.Mol Cell. 2023 Apr 20;83(8):1350-1367.e7. doi: 10.1016/j.molcel.2023.03.013. Epub 2023 Apr 6.PMID: 37028419 Free article.